BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB014D07LP1|AL426681
(749 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1035 1334 0.0
>3x_Contig1035
Length = 4175
Score = 1334 bits (667), Expect = 0.0
Identities = 732/753 (97%), Gaps = 8/753 (1%)
Strand = Plus / Minus
Query: 1 gatccaatgggacatggaaaattagatatatagggttgtcagactgtgggtagagtaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933 gatccaatgggacatggaaaattagatatatagggttgtcagactgtgggtagagtaaac 1874
Query: 61 aatcgcgctgtccttgccagtcgaagtctctccctctctctttatctcttgagaaggaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1873 aatcgcgctgtccttgccagtcgaagtctctccctctctctttatctcttgagaaggaca 1814
Query: 121 tctcgtcttcaaggtaagggaaaatcaaatatcacatttgacgaacattcaaatattatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1813 tctcgtcttcaaggtaagggaaaatcaaatatcacatttgacgaacattcaaatattatg 1754
Query: 181 tggtgtgctggtgtaaatgcatttattgtatgcmatgatggcttcaagcatgccaaatgg 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1753 tggtgtgctggtgtaaatgcatttattgtatgcaatgatggcttcaagcatgccaaatgg 1694
Query: 241 gtttaaatcaagtgattactgtctcgtattaattaattatttacgaaacaatttatatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1693 gtttaaatcaagtgattactgtctcgtattaattaattatttacgaaacaatttatatgg 1634
Query: 301 gctcttggaaccatactatcacctcamatgcttcactttctgtcgtattgtattcgaaca 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1633 gctcttggaaccatactatcacctcaaatgcttcactttctgtcgtattgtattcgaaca 1574
Query: 361 tcttccattcatatcacgtgactgamaactcaaccactcacgtgaccgaacccaaagtgg 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1573 tcttccattcatatcacgtgactgaaaactcaaccactcacgtgaccgaacccaaagtgg 1514
Query: 421 caaamaccgaattaataaggccaacmacctataaacmactacmaaccagtttccttaama 480
|||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||| |
Sbjct: 1513 caaaaaccgaattaataaggccaacaacctataaacaactacaaaccagtttccttaaaa 1454
Query: 481 caacaatagcaacaagaagtgaaccgttcgttcattttgatcacattgcatcacaagtta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 caacaatagcaacaagaagtgaaccgttcgttcattttgatcacattgcatcacaagtta 1394
Query: 541 gtatcagatatgacgaatattaaggttgatggcgaagmaattgacgagagcctgtactct 600
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 1393 gtatcagatatgacgaatattaaggttgatggcgaagaaattgacgagagcttgtactct 1334
Query: 601 cgtcaattgtacgtattag-gtaaagmagcgatgtt--aaagatgccacattcgaacg-t 656
||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||| |
Sbjct: 1333 cgtcaattgtacgtattagcgtaaagaagcgatgttcacaagatgcaacattcgaacgct 1274
Query: 657 tttgatcattgggttaaaaggtttaggtgtcg-agattgccaagaacg-ttgtctt--gg 712
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 1273 tttgatcattgggttaaaaggtttaggtgtcgcagattgccaagaacgcttgtcttcggg 1214
Query: 713 ccggtgttaagtctttaaccctttatgatccaa 745
|||||||||||||||||||||||||||||||||
Sbjct: 1213 ccggtgttaagtctttaaccctttatgatccaa 1181
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4702
Number of Sequences: 1807
Number of extensions: 4702
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 749
length of database: 10,358,551
effective HSP length: 16
effective length of query: 733
effective length of database: 10,329,639
effective search space: 7571625387
effective search space used: 7571625387
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.5 bits)